Certainly. Here are a few:
General relativity replaced newtonian gravity as the more correct explanation, but it is substantially more complicated. Note that for small mass densities, they yield the same results, but for huge mass densities, newtonian gravity yields the wrong result.
Neutrino interactions via boson exchange replaced the earlier Fermi interaction model but are very much more complicated. Note that for low energies they yield the same result but the Fermi model fails at higher energies.
Special relativity replaced galilean invariance in electrodynamics as the correct formalism but is more complicated. Note that for low velocities they yield the same result but at high velocities, the galilean model fails.
The simpler models were perfectly useful and considered correct until circumstances were discovered in which they failed.